biom_relative_abundance.py¶
Convert a BIOM file of OTU abundance data into a CSV of relative abundance data.
usage: biom_relative_abundance.py [-h] [-i INPUT_BIOM_FP] [-o OUTPUT_TSV_FP] [--stabilize_variance] [-v]
Optional arguments¶
-
-o
OUTPUT_CSV_FP
,
--output_csv_fp
OUTPUT_CSV_FP
¶ A CSV table of relative OTU abundance data.
-
--stabilize_variance
¶
Apply the variance-stabilizing arcsine square root transformation to the OTU proportion data.
-
-h
,
--help
¶
Show the help message and exit
-
-v
,
--verbose
¶
Print detailed information about script operation.