filter_rep_set.py
Step 2 of the condensing process. Filter the representative sequence set to
include only those sequences that map to unique OTUs.
usage: filter_rep_set.py [-h] -r REP_SET_FN -u UNIQUE_OTUS_FN [-o OUTPUT_FILTERED_REP_SET_FN] [-v]
Required arguments
-
-r
REP_SET_FN
,
--rep_set_fn
REP_SET_FN
The set of representative sequences.
-
-u
UNIQUE_OTUS_FN
,
--unique_otus_fn
UNIQUE_OTUS_FN
The condensed assigned taxonomy file.
Optional arguments
-
-o
OUTPUT_FILTERED_REP_SET_FN
,
--output_filtered_rep_set_fn
OUTPUT_FILTERED_REP_SET_FN
The filtered representative set. By default outputs to condensed_rep_set.fna
-
-h
,
--help
Show the help message and exit
-
-v
,
--verbose
Print detailed information about script operation.